Notochord cis-regulatory module (CRMs) control gene expression in the notochord, but no CRMs have ever been characterized in humans. Gregorio chose the Ciona for her study because of its “tractable notochord and simplified genome.”
For 14 Ciona notochord CRMs, Gregorio and her team studied the following:
- Minimal sequences of DNA needed for function
- Whether minimal notochord sequences are predictive of CRMs from the entire genome
- How Ciona species differ in CRM sequence variety
- How Ciona species differ in CRM sequence variety from other chordates (mice, zebrafish)
"While we were analyzing the CRMs of Ciona, we discovered that they are similar to notochord CRMs that had been previously identified in vertebrates," said Gregorio. "This finding is significant because it indicates that this research is not limited to Ciona but extends to other chordates, and most likely humans."
Their results also identified two transcription factors as binders of CRMs and as responsible for activating certain genes:
- Brachyury
- Foxa2
"The ability to identify mutations in notochord CRMs could enable us to predict the occurrence of birth defects, and eventually CRMs could be used as therapeutic targets to correct them," Gregorio said the implications for humans.
For more about the notochord in human development:
Source: New York University